Function reference • jackalope

All functions
`create_genome()`	Create a reference genome.
`create_haplotypes()`	Create haplotypes from a reference genome.
`evo_rates`	Table of evolutionary rates.
`haplotypes`	An R6 Class Representing Haploid Variants
`haps_functions`	Organize higher-level information for creating haplotypes.
`haps_gtrees()` `write_gtrees()`	Organize information to create haplotypes using gene trees
`haps_phylo()`	Organize information to create haplotypes using phylogenetic tree(s)
`haps_ssites()`	Organize information to create haplotypes using segregating sites matrices
`haps_theta()`	Organize information to create haplotypes using theta parameter
`haps_vcf()`	Organize information to create haplotypes using a VCF file
`illumina()`	Create and write Illumina reads to FASTQ file(s).
`indels()`	Insertions and deletions (indels) specification
`pacbio()`	Create and write PacBio reads to FASTQ file(s).
`read_fasta()`	Read a fasta file.
`ref_genome`	R6 Class Representing a Reference Genome
`sub_JC69()` `sub_K80()` `sub_F81()` `sub_HKY85()` `sub_F84()` `sub_TN93()` `sub_GTR()` `sub_UNREST()`	Construct necessary information for substitution models.
`write_fasta()`	Write a `ref_genome` or `haplotypes` object to a FASTA file.
`write_vcf()`	Write haplotype info from a `haplotypes` object to a VCF file.

Reference