This function organizes higher-level information for creating variants from Variant Call Format (VCF) files.
vars_vcf(fn, print_names = FALSE, ...)
A single string specifying the name of the VCF file
Logical for whether to print all unique sequence names from
the VCF file when VCF sequence names don't match those from the reference genome.
This printing doesn't happen until this object is passed to
Arguments to pass to
vars_vcf_info object containing information used in
to create haploid variants.
This class is just a wrapper around a list containing relevant output from
haplotypes, reference sequences, positions, sequence names, and variant names.
This function won't work if the package
vcfR isn't installed.