This function organizes higher-level information for creating variants from Variant Call Format (VCF) files.
vars_vcf(fn, print_names = FALSE)
| fn | A single string specifying the name of the VCF file |
|---|---|
| print_names | Logical for whether to print all unique chromosome names from
the VCF file when VCF chromosome names don't match those from the reference genome.
This printing doesn't happen until this object is passed to |
A vars_vcf_info object containing information used in create_variants
to create haploid variants.
This class is just a wrapper around a list containing the arguments to this
function, which you can view (but not change) using the object's fn() and
print_names() methods.