This function organizes higher-level information for creating variants from gene trees output from coalescent simulations.
vars_gtrees(obj = NULL, fn = NULL)
Object containing gene trees.
This can be one of the following:
(1) A single
A single string specifying the name of the file containing
vars_gtrees_info object containing information used in
to create haploid variants.
This class is just a wrapper around a list of NEWICK tree strings, one for
each gene tree.
obj argument is designed after the
trees fields in the output from
(These packages are not required to be installed when installing
To get gene trees, make sure to add
make sure that
"-T" is present in
If using an output file from a command-line program like